Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5099911/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  178,785,687
 Normal Paired: 155,493,513 (86.97%)
 Chimeric Paired: 20,243,671 (11.32%)
 Chimeric Ambiguous: 2,638,415 (1.48%)
 Unmapped: 410,088 (0.23%)
 Ligation Motif Present: 28,171 (0.02%)
Alignable (Normal+Chimeric Paired): 175,737,184 (98.29%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-01T05:54:11,851]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 59,131,178 (33.07%)
PCR Duplicates: 116,606,006 (65.22%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 63,003,559
Intra-fragment Reads: 31,423,679 (17.58% / 53.14%)
Below MAPQ Threshold: 4,038,233 (2.26% / 6.83%)
Hi-C Contacts: 23,669,266 (13.24% / 40.03%)
 Ligation Motif Present: 11,640  (0.01% / 0.02%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 28% - 25% - 25% - 23%
Inter-chromosomal: 4,047,865  (2.26% / 6.85%)
Intra-chromosomal: 19,621,401  (10.97% / 33.18%)
Short Range (<20Kb): 11,666,154  (6.53% / 19.73%)
Long Range (>20Kb): 7,955,232  (4.45% / 13.45%)